HL_9WW5_041

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

9WW5|1|AA|C|2739, 9WW5|1|AA|U|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_041 not in the Motif Atlas

Homologous match to HL_8GLP_044

Geometric discrepancy: 0.0557

The information below is about HL_8GLP_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.6

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

9WW5|1|AA|C|2738
9WW5|1|AA|C|2739
9WW5|1|AA|U|2740
9WW5|1|AA|U|2741
9WW5|1|AA|G|2742

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain Ar

60S ribosomal protein L37a