HL_9WW5_044

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

9WW5|1|AA|U|2874

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_044 not in the Motif Atlas

Homologous match to HL_9AXU_040

Geometric discrepancy: 0.0576

The information below is about HL_9AXU_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9WW5|1|AA|C|2872
9WW5|1|AA|U|2873
9WW5|1|AA|U|2874
9WW5|1|AA|C|2875
9WW5|1|AA|OMG|2876
9WW5|1|AA|G|2877

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain Ap

60S ribosomal protein L41

Chain Ar

60S ribosomal protein L37a

Chain BA

Small subunit ribosomal RNA; SSU rRNA