HL_9WW5_050

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9WW5|1|AA|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_050 not in the Motif Atlas

Homologous match to HL_8GLP_054

Geometric discrepancy: 0.0425

The information below is about HL_8GLP_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

9WW5|1|AA|U|3796
9WW5|1|AA|C|3797
9WW5|1|AA|U|3798
9WW5|1|AA|A|3799
9WW5|1|AA|A|3800
9WW5|1|AA|U|3801
9WW5|1|AA|U|3802
9WW5|1|AA|A|3803
9WW5|1|AA|G|3804

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AX

60S ribosomal protein L23

Chain BA

Small subunit ribosomal RNA; SSU rRNA