HL_9WW5_055

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

9WW5|1|AA|A|4214, 9WW5|1|AA|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_055 not in the Motif Atlas

Homologous match to HL_8GLP_060

Geometric discrepancy: 0.0443

The information below is about HL_8GLP_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.4

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9WW5|1|AA|U|4210
9WW5|1|AA|C|4211
9WW5|1|AA|A|4212
9WW5|1|AA|A|4213
9WW5|1|AA|A|4214
9WW5|1|AA|C|4215
9WW5|1|AA|G|4216
9WW5|1|AA|G|4217
9WW5|1|AA|U|4218
9WW5|1|AA|A|4219
9WW5|1|AA|6MZ|4220
9WW5|1|AA|C|4221
9WW5|1|AA|G|4222

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AL

Ribosomal protein uL16-like

Chain AV

60S ribosomal protein L21

Chain Ad

60S ribosomal protein L29