HL_9WW5_056

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_056 not in the Motif Atlas

Homologous match to HL_9SUM_049

Geometric discrepancy: 0.2378

The information below is about HL_9SUM_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.4

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9WW5|1|AA|G|4250
9WW5|1|AA|A|4251
9WW5|1|AA|C|4252
9WW5|1|AA|A|4253
9WW5|1|AA|G|4254
9WW5|1|AA|A|4255
9WW5|1|AA|A|4256
9WW5|1|AA|A|4257
9WW5|1|AA|C|4258

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AM

60S ribosomal protein L11