HL_9WW5_080

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

9WW5|1|BA|U|161

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_080 not in the Motif Atlas

Homologous match to HL_9PN5_079

Geometric discrepancy: 0.2195

The information below is about HL_9PN5_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9WW5|1|BA|G|156
9WW5|1|BA|U|157
9WW5|1|BA|A|158
9WW5|1|BA|A2M|159
9WW5|1|BA|U|160
9WW5|1|BA|U|161
9WW5|1|BA|C|162

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BW

40S ribosomal protein S6

Chain Bc

40S ribosomal protein S24