HL_9WW5_107

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

9WW5|1|BA|G|1567

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_107 not in the Motif Atlas

Homologous match to HL_9H3G_105

Geometric discrepancy: 0.5279

The information below is about HL_9H3G_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9WW5|1|BA|C|1565
9WW5|1|BA|G|1566
9WW5|1|BA|G|1567
9WW5|1|BA|C|1568
9WW5|1|BA|A|1569
9WW5|1|BA|G|1570

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BK

40S ribosomal protein S15

Chain BM

40S ribosomal protein S18

Chain BN

Small ribosomal subunit protein eS19