HL_9XFK_005

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFK_005 not in the Motif Atlas

Homologous match to HL_8B0X_037

Geometric discrepancy: 0.2238

The information below is about HL_8B0X_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50765.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9XFK|1|I|U|158
9XFK|1|I|G|159
9XFK|1|I|A|160
9XFK|1|I|A|161
9XFK|1|I|U|162
9XFK|1|I|C|163
9XFK|1|I|C|164
9XFK|1|I|A|165
9XFK|1|I|U|166
9XFK|1|I|A|167
9XFK|1|I|G|168

Current chains

Chain I

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L28