HL_9XFK_006

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9XFK|1|I|A|196, 9XFK|1|I|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFK_006 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.0852

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9XFK|1|I|G|194
9XFK|1|I|A|195
9XFK|1|I|A|196
9XFK|1|I|A|197
9XFK|1|I|C|198
9XFK|1|I|A|199
9XFK|1|I|U|200
9XFK|1|I|C|201

Current chains

Chain I

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain f

50S ribosomal protein L28