HL_9XFK_011

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9XFK|1|I|G|329, 9XFK|1|I|A|330, 9XFK|1|I|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFK_011 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3869

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9XFK|1|I|G|327
9XFK|1|I|U|328
9XFK|1|I|G|329
9XFK|1|I|A|330
9XFK|1|I|C|331
9XFK|1|I|A|332
9XFK|1|I|G|333
9XFK|1|I|C|334
9XFK|1|I|C|335

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

Large ribosomal subunit protein uL24