HL_9XFK_013

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9XFK|1|I|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFK_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1286

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9XFK|1|I|G|410
9XFK|1|I|G|411
9XFK|1|I|A|412
9XFK|1|I|C|413
9XFK|1|I|C|414
9XFK|1|I|A|415
9XFK|1|I|U|416
9XFK|1|I|C|417

Current chains

Chain I

23S rRNA

Nearby chains