HL_9XFK_031
3D structure
- PDB id
- 9XFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of bacterial 50S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9XFK_031 not in the Motif Atlas
- Homologous match to HL_7A0S_032
- Geometric discrepancy: 0.1775
- The information below is about HL_7A0S_032
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.5
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 138
Unit IDs
9XFK|1|I|G|1281
9XFK|1|I|U|1282
9XFK|1|I|G|1283
9XFK|1|I|A|1284
9XFK|1|I|A|1285
9XFK|1|I|A|1286
9XFK|1|I|A|1287
9XFK|1|I|G|1288
9XFK|1|I|C|1289
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain V
- Large ribosomal subunit protein bL17
- Chain a
- 50S ribosomal protein L22
Coloring options: