HL_9XFK_065

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9XFK|1|I|G|2751, 9XFK|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFK_065 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.2289

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

9XFK|1|I|C|2745
9XFK|1|I|U|2746
9XFK|1|I|G|2747
9XFK|1|I|A|2748
9XFK|1|I|A|2749
9XFK|1|I|A|2750
9XFK|1|I|G|2751
9XFK|1|I|C|2752
9XFK|1|I|A|2753
9XFK|1|I|U|2754
9XFK|1|I|C|2755
9XFK|1|I|U|2756
9XFK|1|I|A|2757
9XFK|1|I|A|2758
9XFK|1|I|G|2759

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain m

50S ribosomal protein L36