HL_9XFL_004

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

9XFL|1|I|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFL_004 not in the Motif Atlas

Geometric match to HL_4U7U_001

Geometric discrepancy: 0.2277

The information below is about HL_4U7U_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9XFL|1|I|U|137
9XFL|1|I|U|138
9XFL|1|I|U|139
9XFL|1|I|C|140
9XFL|1|I|G|141
9XFL|1|I|A|142

Current chains

Chain I

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L23