HL_9XFL_009

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9XFL|1|I|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFL_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1151

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9XFL|1|I|C|305
9XFL|1|I|U|306
9XFL|1|I|G|307
9XFL|1|I|G|308
9XFL|1|I|A|309
9XFL|1|I|A|310
9XFL|1|I|A|311
9XFL|1|I|G|312

Current chains

Chain I

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL24