HL_9XFL_011

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9XFL|1|I|G|329, 9XFL|1|I|A|330, 9XFL|1|I|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFL_011 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3845

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9XFL|1|I|G|327
9XFL|1|I|U|328
9XFL|1|I|G|329
9XFL|1|I|A|330
9XFL|1|I|C|331
9XFL|1|I|A|332
9XFL|1|I|G|333
9XFL|1|I|C|334
9XFL|1|I|C|335

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

Large ribosomal subunit protein uL24