HL_9XFL_027

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

9XFL|1|I|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFL_027 not in the Motif Atlas

Homologous match to HL_1MMS_003

Geometric discrepancy: 0.2116

The information below is about HL_1MMS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9XFL|1|I|C|1064
9XFL|1|I|U|1065
9XFL|1|I|U|1066
9XFL|1|I|A|1067
9XFL|1|I|G|1068
9XFL|1|I|A|1069
9XFL|1|I|A|1070
9XFL|1|I|G|1071
9XFL|1|I|C|1072
9XFL|1|I|A|1073
9XFL|1|I|G|1074

Current chains

Chain I

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L11