HL_9XFL_047

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

9XFL|1|I|A|1913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFL_047 not in the Motif Atlas

Geometric match to HL_8OI5_044

Geometric discrepancy: 0.3179

The information below is about HL_8OI5_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.2

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9XFL|1|I|G|1910
9XFL|1|I|PSU|1911
9XFL|1|I|A|1912
9XFL|1|I|A|1913
9XFL|1|I|C|1914
9XFL|1|I|3TD|1915
9XFL|1|I|A|1916
9XFL|1|I|PSU|1917
9XFL|1|I|A|1918
9XFL|1|I|A|1919
9XFL|1|I|C|1920

Current chains

Chain I

23S rRNA

Nearby chains