HL_9XFL_065

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9XFL|1|I|G|2751, 9XFL|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFL_065 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.2402

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

9XFL|1|I|C|2745
9XFL|1|I|U|2746
9XFL|1|I|G|2747
9XFL|1|I|A|2748
9XFL|1|I|A|2749
9XFL|1|I|A|2750
9XFL|1|I|G|2751
9XFL|1|I|C|2752
9XFL|1|I|A|2753
9XFL|1|I|U|2754
9XFL|1|I|C|2755
9XFL|1|I|U|2756
9XFL|1|I|A|2757
9XFL|1|I|A|2758
9XFL|1|I|G|2759

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain m

50S ribosomal protein L36