HL_9XTC_016

3D structure

PDB id

9XTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class C, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XTC_016 not in the Motif Atlas

Homologous match to HL_6CZR_087

Geometric discrepancy: 0.1722

The information below is about HL_6CZR_087

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9XTC|1|A|C|726
9XTC|1|A|G|727
9XTC|1|A|A|728
9XTC|1|A|A|729
9XTC|1|A|G|730
9XTC|1|A|G|731

Current chains

Chain A

RNA (1176-MER)

Nearby chains

Chain O

30S ribosomal protein S15