9XTC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9XTC_001 | 1/A/12:22 | No text annotation | homologous HL_6CZR_072 NA | |
| HL_9XTC_003 | 1/A/158:163 | GNRA | homologous HL_6CZR_074 NA | |
| HL_9XTC_004 | 1/A/186:191 | No text annotation | geometric HL_8GLP_070 HL_34789.5 | |
| HL_9XTC_005 | 1/A/207:212 | UNCG | geometric HL_7OAX_001 HL_61337.5 | |
| HL_9XTC_006 | 1/A/259:267 | GNRA related | homologous HL_6CZR_077 NA | |
| HL_9XTC_007 | 1/A/296:301 | GNRA | homologous HL_6CZR_078 NA | |
| HL_9XTC_008 | 1/A/320:333 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_9XTC_009 | 1/A/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_9XTC_010 | 1/A/379:384 | GNRA | homologous HL_6CZR_081 NA | |
| HL_9XTC_011 | 1/A/419:424 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_9XTC_012 | 1/A/462:470 | No text annotation | geometric HL_8B0X_011 HL_98423.4 | |
| HL_9XTC_013 | 1/A/522:527 | GNRA variation | homologous HL_6CZR_216 NA | |
| HL_9XTC_014 | 1/A/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_9XTC_015 | 1/A/689:698 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_9XTC_016 | 1/A/726:731 | GNRA | homologous HL_6CZR_087 NA | |
| HL_9XTC_017 | 1/A/786:796 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_9XTC_019 | 1/A/862:867 | GNRA | homologous HL_6CZR_090 NA | |
| HL_9XTC_020 | 1/A/897:902 | GNRA | homologous HL_6CZR_091 NA | |
| HL_9XTC_021 | 1/A/1076:1081 | GNRA | homologous HL_6CZR_095 NA | |
| HL_9XTC_024 | 1/A/1449:1454 | UNCG | geometric HL_5D5L_003 HL_61337.5 | |
| HL_9XTC_025 | 1/A/1515:1520 | GNRA | homologous HL_6CZR_103 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9XTC_002 | No text annotation | ||
| HL_9XTC_018 | No text annotation | ||
| HL_9XTC_022 | T-loop related | ||
| HL_9XTC_023 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9XTC_001 | 1/A/30:32, 1/A/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_9XTC_002 | 1/A/44:45, 1/A/396:398 | Single bulged A | homologous IL_6CZR_114 NA | |
| IL_9XTC_003 | 1/A/47:52, 1/A/359:361 | No text annotation | geometric IL_8B0X_003 IL_32983.2 | |
| IL_9XTC_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_9XTC_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_9XTC_006 | 1/A/67:69, 1/A/99:102 | No text annotation | geometric IL_8B0X_006 IL_82096.1 | |
| IL_9XTC_007 | 1/A/70:73, 1/A/97:98 | No text annotation | geometric IL_8B0X_007 IL_87975.1 | |
| IL_9XTC_008 | 1/A/75:76, 1/A/93:95 | No text annotation | geometric IL_8B0X_008 IL_28408.3 | |
| IL_9XTC_009 | 1/A/128:131, 1/A/231:233 | No text annotation | geometric IL_8B0X_009 IL_76400.2 | |
| IL_9XTC_010 | 1/A/132:136, 1/A/227:230 | Minor groove platform related | homologous IL_6CZR_120 NA | |
| IL_9XTC_011 | 1/A/144:146, 1/A/176:178 | No text annotation | geometric IL_8B0X_011 IL_10892.3 | |
| IL_9XTC_012 | 1/A/147:153, 1/A/168:175 | tWH-tWH-tHW-tHW | homologous IL_6CZR_121 NA | |
| IL_9XTC_013 | 1/A/203:206, 1/A/213:214 | No text annotation | geometric IL_9E6Q_071 IL_87975.1 | |
| IL_9XTC_014 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | homologous IL_6CZR_123 NA | |
| IL_9XTC_015 | 1/A/249:252, 1/A/274:275 | No text annotation | homologous IL_6CZR_405 NA | |
| IL_9XTC_016 | 1/A/292:293, 1/A/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_9XTC_017 | 1/A/367:369, 1/A/392:393 | Single bulged U | homologous IL_6CZR_126 NA | |
| IL_9XTC_018 | 1/A/371:375, 1/A/389:390 | C-loop | homologous IL_6CZR_127 NA | |
| IL_9XTC_019 | 1/A/375:376, 1/A/387:389 | Single bulged G | homologous IL_6CZR_358 NA | |
| IL_9XTC_020 | 1/A/409:416, 1/A/427:433 | No text annotation | geometric IL_8B0X_019 IL_62329.1 | |
| IL_9XTC_021 | 1/A/440:442, 1/A/492:497 | No text annotation | geometric IL_8B0X_020 IL_02111.1 | |
| IL_9XTC_022 | 1/A/446:450, 1/A/483:488 | tWW-tWH-tHS | geometric IL_8B0X_021 IL_82100.1 | |
| IL_9XTC_023 | 1/A/450:455, 1/A/477:483 | No text annotation | homologous IL_6CZR_406 NA | |
| IL_9XTC_024 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_9XTC_025 | 1/A/515:521, 1/A/528:536 | Kink-turn related | homologous IL_6CZR_133 NA | |
| IL_9XTC_026 | 1/A/569:575, 1/A/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_9XTC_027 | 1/A/580:584, 1/A/757:761 | tSH-tWH-tHS | homologous IL_6CZR_135 NA | |
| IL_9XTC_028 | 1/A/594:596, 1/A/644:645 | Major groove platform | homologous IL_6CZR_407 NA | |
| IL_9XTC_029 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_6CZR_137 NA | |
| IL_9XTC_030 | 1/A/605:612, 1/A/628:633 | No text annotation | homologous IL_6CZR_408 NA | |
| IL_9XTC_031 | 1/A/654:655, 1/A/751:754 | No text annotation | geometric IL_8B0X_030 IL_74641.3 | |
| IL_9XTC_032 | 1/A/659:660, 1/A/745:747 | Single stack bend | geometric IL_7A0S_054 IL_15011.4 | |
| IL_9XTC_033 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_9XTC_034 | 1/A/673:677, 1/A/713:717 | Triple non-canonical cWW pairs | homologous IL_6CZR_409 NA | |
| IL_9XTC_035 | 1/A/684:688, 1/A/699:706 | Kink-turn | geometric IL_8B0X_034 IL_71972.2 | |
| IL_9XTC_036 | 1/A/774:778, 1/A/804:805 | Left turn | homologous IL_6CZR_144 NA | |
| IL_9XTC_037 | 1/A/779:783, 1/A/799:803 | tSH-tWH-tHS | homologous IL_6CZR_145 NA | |
| IL_9XTC_038 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_6CZR_364 NA | |
| IL_9XTC_039 | 1/A/922:923, 1/A/1393:1395 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_9XTC_040 | 1/A/925:928, 1/A/1389:1391 | Isolated cWH basepair | geometric IL_8AF0_002 IL_10892.3 | |
| IL_9XTC_043 | 1/A/1399:1401, 1/A/1501:1504 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_9XTC_044 | 1/A/1401:1404, 1/A/1497:1501 | No text annotation | geometric IL_8CRE_467 IL_25873.3 | |
| IL_9XTC_045 | 1/A/1405:1407, 1/A/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4K31_004 IL_71625.4 | |
| IL_9XTC_046 | 1/A/1407:1409, 1/A/1491:1494 | No text annotation | geometric IL_9AXU_061 IL_75527.3 | |
| IL_9XTC_047 | 1/A/1412:1414, 1/A/1486:1488 | Isolated non-canonical cWW pair | homologous IL_6CZR_411 NA | |
| IL_9XTC_048 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_9XTC_049 | 1/A/1430:1435, 1/A/1466:1470 | No text annotation | geometric IL_8GLP_051 IL_47352.3 | |
| IL_9XTC_050 | 1/A/1440:1442, 1/A/1460:1461 | Single bulged A | geometric IL_9DFE_061 IL_14190.3 | |
| IL_9XTC_051 | 1/A/1445:1448, 1/A/1455:1457 | No text annotation | geometric IL_8B0X_064 IL_05502.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9XTC_041 | Single bulged U | ||
| IL_9XTC_042 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9XTC_001 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation | geometric J3_8B0X_001 J3_58657.2 | |
| J3_9XTC_002 | 1/A/46:52, 1/A/359:367, 1/A/393:395 | No text annotation | homologous J3_6CZR_058 NA | |
| J3_9XTC_003 | 1/A/586:588, 1/A/651:654, 1/A/754:755 | No text annotation | geometric J3_8B0X_002 J3_01633.2 | |
| J3_9XTC_004 | 1/A/586:588, 1/A/651:655, 1/A/751:755 | No text annotation | homologous J3_6CZR_077 NA | |
| J3_9XTC_005 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_9XTC_006 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | homologous J3_6CZR_018 NA | |
| J3_9XTC_007 | 1/A/1073:1074, 1/A/1083:1086, 1/A/1099:1102 | No text annotation | homologous J3_6CZR_079 NA | |
| J4_9XTC_001 | 1/A/115:122, 1/A/239:240, 1/A/286:289, 1/A/311:312 | No text annotation | homologous J4_6CZR_027 NA | |
| J4_9XTC_002 | 1/A/142:144, 1/A/178:184, 1/A/193:198, 1/A/219:221 | No text annotation | ||
| J4_9XTC_003 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation | homologous J4_6CZR_013 NA | |
| J5_9XTC_001 | 1/A/36:39, 1/A/403:406, 1/A/436:440, 1/A/497:500, 1/A/545:548 | No text annotation | ||
| J5_9XTC_002 | 1/A/36:39, 1/A/403:406, 1/A/436:442, 1/A/492:500, 1/A/545:548 | No text annotation | ||
| J5_9XTC_003 | 1/A/58:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:354 | No text annotation | homologous J5_6CZR_021 NA |
Problematic loops
No problematic loops
Coloring options: