HL_9XTD_004

3D structure

PDB id

9XTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class B, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XTD_004 not in the Motif Atlas

Geometric match to HL_9H3G_075

Geometric discrepancy: 0.0706

The information below is about HL_9H3G_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9XTD|1|A|C|186
9XTD|1|A|G|187
9XTD|1|A|C|188
9XTD|1|A|A|189
9XTD|1|A|A|190
9XTD|1|A|G|191

Current chains

Chain A

RNA (1128-MER)

Nearby chains

Chain T

Small ribosomal subunit protein bS20