HL_9XWO_016
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9XWO_016 not in the Motif Atlas
- Homologous match to HL_6CZR_086
- Geometric discrepancy: 0.1257
- The information below is about HL_6CZR_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9XWO|1|A|C|689
9XWO|1|A|G|690
9XWO|1|A|G|691
9XWO|1|A|U|692
9XWO|1|A|G|693
9XWO|1|A|A|694
9XWO|1|A|A|695
9XWO|1|A|A|696
9XWO|1|A|U|697
9XWO|1|A|G|698
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain G
- 30S ribosomal protein S7
- Chain K
- 30S ribosomal protein S11
- Chain U
- 30S ribosomal protein S21
- Chain X
- SecM mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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