HL_9XWO_052

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9XWO|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XWO_052 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0864

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9XWO|1|a|G|410
9XWO|1|a|G|411
9XWO|1|a|A|412
9XWO|1|a|C|413
9XWO|1|a|C|414
9XWO|1|a|A|415
9XWO|1|a|U|416
9XWO|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains