HL_9XWO_057

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9XWO|1|a|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XWO_057 not in the Motif Atlas

Geometric match to HL_8B0X_049

Geometric discrepancy: 0.1107

The information below is about HL_8B0X_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9XWO|1|a|C|611
9XWO|1|a|G|612
9XWO|1|a|A|613
9XWO|1|a|A|614
9XWO|1|a|U|615
9XWO|1|a|A|616
9XWO|1|a|G|617

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4