HL_9XWO_069

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

9XWO|1|a|U|1325, 9XWO|1|a|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XWO_069 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.1771

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9XWO|1|a|G|1324
9XWO|1|a|U|1325
9XWO|1|a|U|1326
9XWO|1|a|A|1327
9XWO|1|a|A|1328
9XWO|1|a|U|1329
9XWO|1|a|C|1330

Current chains

Chain a

23S rRNA

Nearby chains

Chain 6

Secretion monitor

Chain m

Large ribosomal subunit protein bL17

Chain r

50S ribosomal protein L22