HL_9XWO_072

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9XWO|1|a|A|1453, 9XWO|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XWO_072 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.0646

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9XWO|1|a|C|1451
9XWO|1|a|G|1452
9XWO|1|a|A|1453
9XWO|1|a|C|1454
9XWO|1|a|G|1455
9XWO|1|a|G|1456
9XWO|1|a|U|1457
9XWO|1|a|U|1458
9XWO|1|a|G|1459

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17