HL_9XWO_089
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 9XWO|1|a|G|2250
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9XWO_089 not in the Motif Atlas
- Homologous match to HL_7A0S_052
- Geometric discrepancy: 0.1206
- The information below is about HL_7A0S_052
- Detailed Annotation
- LSU P loop
- Broad Annotation
- LSU P loop
- Motif group
- HL_11974.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
9XWO|1|a|C|2248
9XWO|1|a|U|2249
9XWO|1|a|G|2250
9XWO|1|a|OMG|2251
9XWO|1|a|G|2252
9XWO|1|a|G|2253
9XWO|1|a|C|2254
9XWO|1|a|G|2255
9XWO|1|a|G|2256
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain l
- 50S ribosomal protein L16
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: