HL_9XWO_103

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UUUA

Length

4 nucleotides

Bulged bases

9XWO|1|a|U|2797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XWO_103 not in the Motif Atlas

Geometric match to HL_8VMA_002

Geometric discrepancy: 0.1257

The information below is about HL_8VMA_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.5

Basepair signature

cWW-F

Number of instances in this motif group

42

Unit IDs

9XWO|1|a|U|2796
9XWO|1|a|U|2797
9XWO|1|a|U|2798
9XWO|1|a|A|2799

Current chains

Chain a

23S rRNA

Nearby chains