HL_9Y49_005

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9Y49|1|A5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_005 not in the Motif Atlas

Homologous match to HL_9H3G_009

Geometric discrepancy: 0.2356

The information below is about HL_9H3G_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9Y49|1|A5|U|204
9Y49|1|A5|C|205
9Y49|1|A5|U|206
9Y49|1|A5|G|207
9Y49|1|A5|A|208
9Y49|1|A5|U|209
9Y49|1|A5|C|210
9Y49|1|A5|G|211

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CY

60S ribosomal protein L26

Chain Ce

60S ribosomal protein L32