HL_9Y49_026

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9Y49|1|A5|C|1676, 9Y49|1|A5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_026 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.2361

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.3

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

9Y49|1|A5|C|1675
9Y49|1|A5|C|1676
9Y49|1|A5|U|1677
9Y49|1|A5|C|1678
9Y49|1|A5|A|1679
9Y49|1|A5|G|1680

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain Ca

60S ribosomal protein L27a

Chain Cb

60S ribosomal protein L29

Chain Co

60S ribosomal protein L36a