HL_9Y49_032

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_032 not in the Motif Atlas

Geometric match to HL_4V9F_043

Geometric discrepancy: 0.2802

The information below is about HL_4V9F_043

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9Y49|1|A5|U|2006
9Y49|1|A5|G|2007
9Y49|1|A5|U|2008
9Y49|1|A5|A|2009
9Y49|1|A5|A|2010
9Y49|1|A5|C|2011
9Y49|1|A5|A|2012
9Y49|1|A5|A|2013

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain Cm

60S ribosomal protein L40

Chain Ct

Elongation factor 2