HL_9Y49_055

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9Y49|1|A6|A|3876, 9Y49|1|A6|A|3877, 9Y49|1|A6|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_055 not in the Motif Atlas

Homologous match to HL_8GLP_055

Geometric discrepancy: 0.115

The information below is about HL_8GLP_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

9Y49|1|A6|G|3873
9Y49|1|A6|G|3874
9Y49|1|A6|G|3875
9Y49|1|A6|A|3876
9Y49|1|A6|A|3877
9Y49|1|A6|C|3878
9Y49|1|A6|G|3879
9Y49|1|A6|G|3880
9Y49|1|A6|G|3881
9Y49|1|A6|C|3882

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CB

60S ribosomal protein L3

Chain CO

60S ribosomal protein L13a

Chain Ce

60S ribosomal protein L32