HL_9Y49_059

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9Y49|1|A6|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_059 not in the Motif Atlas

Homologous match to HL_8GLP_059

Geometric discrepancy: 0.2158

The information below is about HL_8GLP_059

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9Y49|1|A6|C|4193
9Y49|1|A6|U|4194
9Y49|1|A6|G|4195
9Y49|1|A6|G|4196
9Y49|1|A6|G|4197
9Y49|1|A6|G|4198
9Y49|1|A6|C|4199
9Y49|1|A6|G|4200
9Y49|1|A6|G|4201

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CI

60S ribosomal protein L10-like

Chain Cb

60S ribosomal protein L29