HL_9Y49_094

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9Y49|1|B2|A|500

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_094 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.2041

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9Y49|1|B2|C|498
9Y49|1|B2|G|499
9Y49|1|B2|A|500
9Y49|1|B2|C|501
9Y49|1|B2|C|502
9Y49|1|B2|C|503
9Y49|1|B2|G|504

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AY

40S ribosomal protein S24