HL_9Y4G_001
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 9Y4G|1|A5|A|39, 9Y4G|1|A5|A|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Y4G_001 not in the Motif Atlas
- Homologous match to HL_8GLP_001
- Geometric discrepancy: 0.137
- The information below is about HL_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02262.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 36
Unit IDs
9Y4G|1|A5|U|37
9Y4G|1|A5|A|38
9Y4G|1|A5|A|39
9Y4G|1|A5|G|40
9Y4G|1|A5|C|41
9Y4G|1|A5|A|42
9Y4G|1|A5|U|43
9Y4G|1|A5|A|44
Current chains
- Chain A5
- LSU-alpha rRNA
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain CL
- 60S ribosomal protein L13
- Chain CN
- 60S ribosomal protein L15
- Chain Ca
- 60S ribosomal protein L27a
- Chain Co
- 60S ribosomal protein L36a
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