9Y4G Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9Y4G_001 | 1/A5/37:44 | No text annotation | homologous HL_8GLP_001 HL_02262.1 | |
| HL_9Y4G_002 | 1/A5/68:73 | No text annotation | homologous HL_9AXU_002 HL_23875.1 | |
| HL_9Y4G_003 | 1/A5/89:95 | No text annotation | homologous HL_8GLP_003 HL_76371.4 | |
| HL_9Y4G_005 | 1/A5/204:211 | No text annotation | homologous HL_9H3G_009 HL_13999.5 | |
| HL_9Y4G_006 | 1/A5/222:226 | No text annotation | homologous HL_9AXU_006 HL_75660.10 | |
| HL_9Y4G_007 | 1/A5/230:238 | No text annotation | homologous HL_9AXU_007 HL_27670.6 | |
| HL_9Y4G_008 | 1/A5/289:298 | No text annotation | homologous HL_8GLP_008 HL_63894.4 | |
| HL_9Y4G_009 | 1/A5/314:323 | No text annotation | homologous HL_8GLP_009 HL_00911.4 | |
| HL_9Y4G_010 | 1/A5/368:373 | No text annotation | homologous HL_8GLP_010 HL_34789.6 | |
| HL_9Y4G_011 | 1/A5/393:398 | No text annotation | homologous HL_8GLP_118 HL_34789.6 | |
| HL_9Y4G_016 | 1/A5/1317:1326 | No text annotation | homologous HL_9PN5_014 HL_33597.7 | |
| HL_9Y4G_017 | 1/A5/1364:1373 | No text annotation | ||
| HL_9Y4G_018 | 1/A5/1389:1394 | No text annotation | homologous HL_8GLP_018 HL_34789.6 | |
| HL_9Y4G_021 | 1/A5/1561:1566 | No text annotation | homologous HL_8GLP_022 HL_34789.6 | |
| HL_9Y4G_022 | 1/A5/1593:1602 | No text annotation | homologous HL_9AXU_018 HL_50204.3 | |
| HL_9Y4G_023 | 1/A5/1627:1635 | No text annotation | geometric HL_6CF2_001 HL_28253.1 | |
| HL_9Y4G_024 | 1/A5/1675:1680 | No text annotation | homologous HL_9H3G_028 HL_27530.3 | |
| HL_9Y4G_027 | 1/A5/1864:1870 | No text annotation | homologous HL_9AXU_023 HL_34789.6 | |
| HL_9Y4G_028 | 1/A5/1886:1893 | No text annotation | homologous HL_8GLP_029 HL_47171.3 | |
| HL_9Y4G_031 | 1/A6/2317:2322 | No text annotation | homologous HL_9H3G_034 HL_34789.6 | |
| HL_9Y4G_032 | 1/A6/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8GLP_033 HL_33597.7 | |
| HL_9Y4G_033 | 1/A6/2420:2426 | No text annotation | homologous HL_8GLP_034 HL_49081.2 | |
| HL_9Y4G_034 | 1/A6/2458:2463 | No text annotation | homologous HL_8GLP_035 HL_34789.6 | |
| HL_9Y4G_036 | 1/A6/2523:2532 | No text annotation | homologous HL_8GLP_038 HL_77449.3 | |
| HL_9Y4G_038 | 1/A6/2578:2583 | No text annotation | homologous HL_9PN5_035 HL_34789.6 | |
| HL_9Y4G_039 | 1/A6/2624:2632 | No text annotation | homologous HL_9PN5_036 HL_22758.3 | |
| HL_9Y4G_040 | 1/A6/2664:2670 | No text annotation | homologous HL_8GLP_042 HL_67772.3 | |
| HL_9Y4G_042 | 1/A6/2738:2742 | No text annotation | homologous HL_9AXU_037 HL_90436.5 | |
| HL_9Y4G_043 | 1/A6/2792:2799 | No text annotation | homologous HL_8GLP_045 HL_28592.4 | |
| HL_9Y4G_044 | 1/A6/2810:2816 | No text annotation | homologous HL_8GLP_046 HL_34789.6 | |
| HL_9Y4G_045 | 1/A6/2872:2877 | No text annotation | homologous HL_8GLP_047 HL_61337.6 | |
| HL_9Y4G_046 | 1/A6/2910:3584 | No text annotation | ||
| HL_9Y4G_047 | 1/A6/3614:3618 | No text annotation | homologous HL_8GLP_049 NA | |
| HL_9Y4G_048 | 1/A6/3639:3649 | No text annotation | homologous HL_9H3G_049 HL_87681.3 | |
| HL_9Y4G_049 | 1/A6/3668:3674 | No text annotation | homologous HL_9H3G_050 HL_34789.6 | |
| HL_9Y4G_050 | 1/A6/3724:3729 | No text annotation | homologous HL_9AXU_044 HL_34789.6 | |
| HL_9Y4G_051 | 1/A6/3757:3767 | No text annotation | homologous HL_9H3G_052 HL_82185.3 | |
| HL_9Y4G_052 | 1/A6/3796:3804 | No text annotation | homologous HL_8GLP_054 HL_77449.3 | |
| HL_9Y4G_053 | 1/A6/3873:3882 | No text annotation | homologous HL_8GLP_055 HL_78372.3 | |
| HL_9Y4G_056 | 1/A6/4193:4201 | No text annotation | homologous HL_9H3G_055 HL_11974.4 | |
| HL_9Y4G_057 | 1/A6/4210:4222 | No text annotation | homologous HL_8GLP_060 HL_02042.3 | |
| HL_9Y4G_059 | 1/A6/4270:4277 | No text annotation | homologous HL_9PN5_055 HL_52651.4 | |
| HL_9Y4G_060 | 1/A6/4301:4309 | No text annotation | homologous HL_9PN5_056 HL_15296.3 | |
| HL_9Y4G_061 | 1/A6/4321:4326 | No text annotation | homologous HL_8GLP_064 HL_34789.6 | |
| HL_9Y4G_062 | 1/A6/4352:4362 | No text annotation | homologous HL_8GLP_065 HL_14856.1 | |
| HL_9Y4G_063 | 1/A6/4417:4425 | No text annotation | homologous HL_9PN5_059 HL_52011.3 | |
| HL_9Y4G_064 | 1/A6/4474:4481 | No text annotation | homologous HL_8GLP_067 HL_02262.1 | |
| HL_9Y4G_065 | 1/A6/4497:4503 | No text annotation | homologous HL_9H3G_064 HL_02262.1 | |
| HL_9Y4G_066 | 1/A6/4540:4545 | No text annotation | homologous HL_9H3G_065 HL_34789.6 | |
| HL_9Y4G_067 | 1/A6/4603:4608 | No text annotation | homologous HL_8GLP_070 HL_34789.6 | |
| HL_9Y4G_068 | 1/A6/4646:4651 | No text annotation | homologous HL_8GLP_071 HL_12125.4 | |
| HL_9Y4G_069 | 1/A6/4688:4702 | No text annotation | homologous HL_9PN5_065 HL_53269.4 | |
| HL_9Y4G_071 | 1/A6/4907:4914 | No text annotation | homologous HL_8GLP_074 HL_31089.3 | |
| HL_9Y4G_072 | 1/A6/4975:4983 | No text annotation | homologous HL_9H3G_071 HL_37889.3 | |
| HL_9Y4G_074 | 1/A7/32:45 | No text annotation | geometric HL_9AXU_068 HL_01182.2 | |
| HL_9Y4G_076 | 1/A7/86:91 | GNRA | homologous HL_7A0S_070 HL_34789.6 | |
| HL_9Y4G_077 | 1/A8/47:56 | No text annotation | homologous HL_9AXU_071 HL_17803.3 | |
| HL_9Y4G_078 | 1/A8/68:90 | No text annotation | homologous HL_9H3G_002 NA | |
| HL_9Y4G_079 | 1/A8/107:112 | No text annotation | homologous HL_9AXU_073 HL_23875.1 | |
| HL_9Y4G_081 | 1/B2/7:17 | No text annotation | homologous HL_9H3G_079 HL_73535.3 | |
| HL_9Y4G_083 | 1/B2/156:162 | No text annotation | homologous HL_9PN5_079 HL_34789.6 | |
| HL_9Y4G_087 | 1/B2/377:387 | No text annotation | geometric HL_8GLP_091 HL_50525.1 | |
| HL_9Y4G_088 | 1/B2/416:421 | No text annotation | homologous HL_9PN5_085 HL_34789.6 | |
| HL_9Y4G_089 | 1/B2/441:452 | No text annotation | homologous HL_9PN5_086 HL_86432.3 | |
| HL_9Y4G_090 | 1/B2/462:467 | No text annotation | homologous HL_9PN5_087 HL_61337.6 | |
| HL_9Y4G_094 | 1/B2/618:623 | No text annotation | homologous HL_9PN5_091 HL_34789.6 | |
| HL_9Y4G_099 | 1/B2/957:966 | No text annotation | homologous HL_9PN5_095 HL_38491.4 | |
| HL_9Y4G_100 | 1/B2/994:999 | No text annotation | homologous HL_9H3G_094 HL_34789.6 | |
| HL_9Y4G_101 | 1/B2/1054:1064 | No text annotation | homologous HL_9H3G_095 HL_38491.4 | |
| HL_9Y4G_103 | 1/B2/1141:1146 | No text annotation | homologous HL_9PN5_099 HL_34789.6 | |
| HL_9Y4G_104 | 1/B2/1178:1183 | No text annotation | homologous HL_9PN5_100 HL_34789.6 | |
| HL_9Y4G_105 | 1/B2/1245:1254 | No text annotation | homologous HL_9PN5_101 HL_97521.3 | |
| HL_9Y4G_107 | 1/B2/1353:1358 | No text annotation | homologous HL_9H3G_101 HL_34789.6 | |
| HL_9Y4G_112 | 1/B2/1614:1625 | No text annotation | homologous HL_9PN5_108 HL_50951.3 | |
| HL_9Y4G_115 | 1/B2/1847:1852 | No text annotation | homologous HL_9H3G_108 HL_34789.6 | |
| HL_9Y4G_117 | 1/Bb/31:39 | No text annotation | homologous HL_7U2J_104 HL_81376.4 | |
| HL_9Y4G_119 | 1/Cc/32:40 | tRNA anticodon loop | homologous HL_9MTS_102 HL_81376.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9Y4G_004 | No text annotation | ||
| HL_9Y4G_012 | No text annotation | ||
| HL_9Y4G_013 | Purine riboswitch | ||
| HL_9Y4G_014 | No text annotation | ||
| HL_9Y4G_015 | No text annotation | ||
| HL_9Y4G_019 | No text annotation | ||
| HL_9Y4G_020 | No text annotation | ||
| HL_9Y4G_025 | No text annotation | ||
| HL_9Y4G_026 | No text annotation | ||
| HL_9Y4G_029 | No text annotation | ||
| HL_9Y4G_030 | No text annotation | ||
| HL_9Y4G_035 | No text annotation | ||
| HL_9Y4G_037 | No text annotation | ||
| HL_9Y4G_041 | No text annotation | ||
| HL_9Y4G_054 | UNCG | ||
| HL_9Y4G_055 | No text annotation | ||
| HL_9Y4G_058 | No text annotation | ||
| HL_9Y4G_070 | No text annotation | ||
| HL_9Y4G_073 | No text annotation | ||
| HL_9Y4G_075 | No text annotation | ||
| HL_9Y4G_080 | No text annotation | ||
| HL_9Y4G_082 | No text annotation | ||
| HL_9Y4G_084 | GNRA | ||
| HL_9Y4G_085 | No text annotation | ||
| HL_9Y4G_086 | No text annotation | ||
| HL_9Y4G_091 | No text annotation | ||
| HL_9Y4G_092 | No text annotation | ||
| HL_9Y4G_093 | No text annotation | ||
| HL_9Y4G_095 | No text annotation | ||
| HL_9Y4G_096 | No text annotation | ||
| HL_9Y4G_097 | No text annotation | ||
| HL_9Y4G_098 | No text annotation | ||
| HL_9Y4G_102 | No text annotation | ||
| HL_9Y4G_106 | No text annotation | ||
| HL_9Y4G_108 | No text annotation | ||
| HL_9Y4G_109 | No text annotation | ||
| HL_9Y4G_110 | No text annotation | ||
| HL_9Y4G_111 | No text annotation | ||
| HL_9Y4G_113 | No text annotation | ||
| HL_9Y4G_114 | No text annotation | ||
| HL_9Y4G_116 | No text annotation | ||
| HL_9Y4G_118 | tRNA D-loop | ||
| HL_9Y4G_120 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9Y4G_001 | 1/A5/6:7, 1/A8/149:151 | Single bulged C | homologous IL_9PN5_001 IL_05642.5 | |
| IL_9Y4G_002 | 1/A5/12:14, 1/A8/143:144 | Single bulged U | homologous IL_9PN5_002 IL_97561.7 | |
| IL_9Y4G_003 | 1/A5/16:18, 1/A8/139:141 | Isolated non-canonical cWW pair | homologous IL_8GLP_003 IL_01003.6 | |
| IL_9Y4G_004 | 1/A5/26:27, 1/A5/55:57 | Single stack bend | homologous IL_8GLP_004 IL_15011.5 | |
| IL_9Y4G_005 | 1/A5/30:37, 1/A5/44:52 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_8GLP_005 IL_93502.3 | |
| IL_9Y4G_006 | 1/A5/81:88, 1/A5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8GLP_006 IL_62167.5 | |
| IL_9Y4G_008 | 1/A5/118:122, 1/A5/147:153 | Kink-turn with embedded cWW pair | geometric IL_8GLP_287 IL_65996.1 | |
| IL_9Y4G_009 | 1/A5/121:122, 1/A5/147:152 | No text annotation | homologous IL_9AXU_006 IL_10396.3 | |
| IL_9Y4G_014 | 1/A5/195:196, 1/A5/244:246 | Single bulged C | homologous IL_8GLP_015 IL_05642.5 | |
| IL_9Y4G_015 | 1/A5/199:201, 1/A5/214:215 | Single bulged U | homologous IL_8GLP_016 IL_97561.7 | |
| IL_9Y4G_016 | 1/A5/348:350, 1/A8/25:26 | Single bulged A | homologous IL_8GLP_018 IL_14190.4 | |
| IL_9Y4G_017 | 1/A5/387:390, 1/A5/401:414 | No text annotation | geometric IL_8GLP_019 IL_44923.3 | |
| IL_9Y4G_018 | 1/A5/415:421, 1/A8/13:19 | No text annotation | homologous IL_8GLP_021 IL_22311.3 | |
| IL_9Y4G_019 | 1/A5/443:446, 1/A5/1300:1304 | No text annotation | geometric IL_7MLW_007 IL_49140.2 | |
| IL_9Y4G_020 | 1/A5/448:450, 1/A5/1297:1298 | No text annotation | geometric IL_9H3G_115 IL_57267.1 | |
| IL_9Y4G_029 | 1/A5/508:510, 1/A5/649:650 | Single bulged A | homologous IL_8GLP_032 IL_14190.4 | |
| IL_9Y4G_032 | 1/A5/708:709, 1/A5/1287:1289 | No text annotation | ||
| IL_9Y4G_033 | 1/A5/722:724, 1/A5/942:946 | No text annotation | ||
| IL_9Y4G_034 | 1/A5/727:737, 1/A5/927:939 | No text annotation | ||
| IL_9Y4G_047 | 1/A5/1425:1429, 1/A5/1455:1460 | No text annotation | homologous IL_8GLP_051 IL_47352.3 | |
| IL_9Y4G_048 | 1/A5/1431:1434, 1/A5/1450:1453 | Double sheared | homologous IL_8GLP_052 IL_58355.4 | |
| IL_9Y4G_049 | 1/A5/1467:1468, 1/A5/1496:1498 | Single bulged A | homologous IL_8GLP_053 IL_14190.4 | |
| IL_9Y4G_050 | 1/A5/1474:1476, 1/A5/1489:1490 | Single stack bend | homologous IL_8GLP_054 IL_15011.5 | |
| IL_9Y4G_051 | 1/A5/1520:1522, 1/A5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8GLP_289 IL_01003.6 | |
| IL_9Y4G_052 | 1/A5/1522:1526, 1/A5/1648:1655 | No text annotation | homologous IL_8GLP_290 IL_73855.3 | |
| IL_9Y4G_053 | 1/A5/1550:1551, 1/A5/1576:1578 | Single bulged G | homologous IL_8GLP_058 IL_28408.4 | |
| IL_9Y4G_054 | 1/A5/1551:1555, 1/A5/1572:1576 | No text annotation | homologous IL_8GLP_059 IL_15190.4 | |
| IL_9Y4G_055 | 1/A5/1586:1589, 1/A5/1605:1607 | No text annotation | homologous IL_9PN5_031 IL_36931.4 | |
| IL_9Y4G_056 | 1/A5/1590:1592, 1/A5/1603:1604 | Single bulged U | homologous IL_9H3G_038 IL_97561.7 | |
| IL_9Y4G_057 | 1/A5/1624:1626, 1/A5/1636:1640 | No text annotation | homologous IL_8GLP_062 IL_89509.3 | |
| IL_9Y4G_058 | 1/A5/1671:1673, 1/A5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_9H3G_040 IL_71625.5 | |
| IL_9Y4G_059 | 1/A5/1686:1688, 1/A5/1848:1851 | No text annotation | homologous IL_8GLP_064 IL_16315.2 | |
| IL_9Y4G_060 | 1/A5/1723:1725, 1/A5/1837:1839 | Isolated non-canonical cWW pair | geometric IL_4V9K_064 IL_01003.6 | |
| IL_9Y4G_061 | 1/A5/1732:1737, 1/A5/1792:1797 | No text annotation | homologous IL_8GLP_291 IL_46203.1 | |
| IL_9Y4G_062 | 1/A5/1737:1738, 1/A5/1790:1792 | Minor groove platform | homologous IL_9H3G_045 IL_41261.1 | |
| IL_9Y4G_063 | 1/A5/1739:1744, 1/A5/1786:1789 | No text annotation | homologous IL_9AXU_039 IL_16301.3 | |
| IL_9Y4G_064 | 1/A5/1746:1749, 1/A5/1781:1784 | Tandem non-canonical cWW pairs; U in syn | homologous IL_9PN5_040 IL_71194.4 | |
| IL_9Y4G_065 | 1/A5/1749:1751, 1/A5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_9PN5_041 IL_01003.6 | |
| IL_9Y4G_069 | 1/A5/1858:1860, 1/A5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_9H3G_052 IL_01003.6 | |
| IL_9Y4G_071 | 1/A5/1905:1909, 1/A5/2067:2071 | UAA/GAN | homologous IL_8GLP_075 IL_08938.3 | |
| IL_9Y4G_072 | 1/A5/1911:1918, 1/A5/2064:2065 | No text annotation | homologous IL_8GLP_076 IL_11411.3 | |
| IL_9Y4G_073 | 1/A5/1918:1920, 1/A5/2063:2064 | Single bulged G | homologous IL_8GLP_077 IL_28408.4 | |
| IL_9Y4G_074 | 1/A5/1920:1922, 1/A5/2062:2063 | Single bulged C | homologous IL_8GLP_078 IL_05642.5 | |
| IL_9Y4G_075 | 1/A5/1926:1933, 1/A5/2053:2058 | No text annotation | homologous IL_9H3G_057 IL_39054.3 | |
| IL_9Y4G_076 | 1/A5/1933:1944, 1/A5/2038:2053 | No text annotation | homologous IL_8GLP_080 IL_34501.3 | |
| IL_9Y4G_077 | 1/A5/1946:1948, 1/A5/2035:2036 | Single bulged U | homologous IL_9H3G_059 IL_97561.7 | |
| IL_9Y4G_081 | 1/A5/2083:2085, 1/A6/2272:2273 | Single bulged C | geometric IL_8GLP_044 IL_05642.5 | |
| IL_9Y4G_082 | 1/A6/2290:2292, 1/A6/2342:2345 | No text annotation | homologous IL_8GLP_084 IL_84227.1 | |
| IL_9Y4G_083 | 1/A6/2299:2301, 1/A6/2334:2335 | Single bulged A | homologous IL_8GLP_085 IL_14190.4 | |
| IL_9Y4G_084 | 1/A6/2302:2309, 1/A6/2329:2333 | Kink-turn | homologous IL_8GLP_086 IL_90775.3 | |
| IL_9Y4G_085 | 1/A6/2312:2314, 1/A6/2325:2326 | Major groove intercalation | geometric IL_7A0S_067 IL_77710.2 | |
| IL_9Y4G_086 | 1/A6/2358:2364, 1/A6/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8GLP_300 IL_02666.3 | |
| IL_9Y4G_087 | 1/A6/2415:2419, 1/A6/2427:2429 | No text annotation | homologous IL_8GLP_301 IL_06671.3 | |
| IL_9Y4G_088 | 1/A6/2446:2450, 1/A6/2509:2514 | UAA/GAN | homologous IL_9AXU_060 IL_08938.3 | |
| IL_9Y4G_090 | 1/A6/2542:2547, 1/A6/2772:2774 | No text annotation | homologous IL_8GLP_094 NA | |
| IL_9Y4G_091 | 1/A6/2589:2593, 1/A6/2752:2756 | No text annotation | homologous IL_9H3G_074 IL_15190.4 | |
| IL_9Y4G_092 | 1/A6/2613:2614, 1/A6/2724:2726 | Single bulged C | homologous IL_9PN5_068 IL_05642.5 | |
| IL_9Y4G_093 | 1/A6/2614:2615, 1/A6/2722:2724 | Single stack bend | homologous IL_8GLP_098 IL_15011.5 | |
| IL_9Y4G_095 | 1/A6/2651:2653, 1/A6/2681:2682 | Minor groove platform | geometric IL_5T83_003 IL_41261.1 | |
| IL_9Y4G_096 | 1/A6/2656:2662, 1/A6/2672:2678 | No text annotation | homologous IL_8GLP_101 IL_93476.3 | |
| IL_9Y4G_098 | 1/A6/2832:2838, 1/A6/3850:3853 | No text annotation | homologous IL_9H3G_083 IL_89862.3 | |
| IL_9Y4G_099 | 1/A6/2844:2846, 1/A6/3842:3844 | No text annotation | homologous IL_9AXU_071 IL_10432.3 | |
| IL_9Y4G_100 | 1/A6/2847:2850, 1/A6/3840:3841 | Major groove platform; stack outside cWW | geometric IL_9H3G_085 IL_74641.4 | |
| IL_9Y4G_101 | 1/A6/2847:2855, 1/A6/3837:3841 | No text annotation | geometric IL_8GLP_305 IL_80252.3 | |
| IL_9Y4G_102 | 1/A6/2850:2855, 1/A6/3837:3840 | No text annotation | homologous IL_8GLP_107 IL_28217.3 | |
| IL_9Y4G_103 | 1/A6/2867:2872, 1/A6/2877:2883 | No text annotation | homologous IL_8GLP_108 IL_20700.3 | |
| IL_9Y4G_107 | 1/A6/3632:3633, 1/A6/3827:3829 | Single bulged A | homologous IL_8GLP_113 IL_14190.4 | |
| IL_9Y4G_108 | 1/A6/3660:3665, 1/A6/3677:3684 | No text annotation | homologous IL_8GLP_114 IL_14684.3 | |
| IL_9Y4G_109 | 1/A6/3700:3703, 1/A6/3749:3750 | No text annotation | homologous IL_9AXU_080 IL_55206.3 | |
| IL_9Y4G_110 | 1/A6/3704:3705, 1/A6/3745:3748 | No text annotation | homologous IL_8GLP_117 IL_71421.5 | |
| IL_9Y4G_111 | 1/A6/3708:3710, 1/A6/3741:3742 | Single bulged U | homologous IL_9H3G_095 IL_97561.7 | |
| IL_9Y4G_112 | 1/A6/3710:3714, 1/A6/3739:3741 | No text annotation | ||
| IL_9Y4G_113 | 1/A6/3714:3721, 1/A6/3732:3739 | No text annotation | homologous IL_8GLP_121 NA | |
| IL_9Y4G_114 | 1/A6/3781:3792, 1/A6/3808:3811 | No text annotation | homologous IL_9AXU_084 IL_84014.3 | |
| IL_9Y4G_115 | 1/A6/3895:3898, 1/A6/4563:4565 | No text annotation | homologous IL_9PN5_088 IL_75527.4 | |
| IL_9Y4G_116 | 1/A6/3900:3902, 1/A6/4558:4561 | No text annotation | homologous IL_8GLP_129 IL_80025.3 | |
| IL_9Y4G_117 | 1/A6/3913:3915, 1/A6/4388:4389 | Single bulged U | homologous IL_8GLP_130 IL_97561.7 | |
| IL_9Y4G_118 | 1/A6/3916:3917, 1/A6/4384:4387 | Minor groove platform | homologous IL_8GLP_131 IL_98469.1 | |
| IL_9Y4G_119 | 1/A6/3927:3929, 1/A6/4181:4184 | No text annotation | homologous IL_8GLP_133 IL_87316.4 | |
| IL_9Y4G_124 | 1/A6/4082:4088, 1/A6/4161:4164 | No text annotation | homologous IL_8GLP_135 IL_52092.3 | |
| IL_9Y4G_126 | 1/A6/4191:4192, 1/A6/4202:4204 | AG tHS outside loop | homologous IL_8GLP_137 IL_14190.4 | |
| IL_9Y4G_127 | 1/A6/4243:4245, 1/A6/4263:4267 | No text annotation | homologous IL_9PN5_095 IL_14250.3 | |
| IL_9Y4G_128 | 1/A6/4295:4298, 1/A6/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_9AXU_094 IL_15225.4 | |
| IL_9Y4G_129 | 1/A6/4347:4350, 1/A6/4364:4365 | No text annotation | homologous IL_8GLP_141 IL_57267.1 | |
| IL_9Y4G_130 | 1/A6/4400:4403, 1/A6/4440:4444 | No text annotation | homologous IL_9PN5_098 IL_60246.1 | |
| IL_9Y4G_131 | 1/A6/4403:4407, 1/A6/4435:4440 | No text annotation | ||
| IL_9Y4G_132 | 1/A6/4412:4416, 1/A6/4426:4430 | No text annotation | homologous IL_8GLP_145 IL_87767.4 | |
| IL_9Y4G_133 | 1/A6/4453:4454, 1/A6/4526:4528 | No text annotation | homologous IL_8GLP_146 IL_46637.4 | |
| IL_9Y4G_134 | 1/A6/4456:4458, 1/A6/4520:4524 | No text annotation | homologous IL_9PN5_103 IL_30722.1 | |
| IL_9Y4G_135 | 1/A6/4458:4459, 1/A6/4517:4520 | No text annotation | homologous IL_8GLP_148 IL_44609.4 | |
| IL_9Y4G_136 | 1/A6/4466:4468, 1/A6/4489:4491 | Isolated non-canonical cWW pair | geometric IL_8GLP_149 IL_01003.6 | |
| IL_9Y4G_137 | 1/A6/4466:4470, 1/A6/4485:4491 | No text annotation | geometric IL_8GLP_315 IL_56912.1 | |
| IL_9Y4G_138 | 1/A6/4468:4470, 1/A6/4485:4489 | No text annotation | homologous IL_8GLP_150 IL_09353.2 | |
| IL_9Y4G_139 | 1/A6/4495:4497, 1/A6/4503:4505 | Isolated non-canonical cWW pair | homologous IL_9PN5_108 IL_01003.6 | |
| IL_9Y4G_140 | 1/A6/4537:4538, 1/A6/4547:4549 | Single bulged A | homologous IL_8GLP_154 IL_14190.4 | |
| IL_9Y4G_141 | 1/A6/4580:4582, 1/A6/4721:4723 | Isolated cWH basepair | homologous IL_8GLP_157 IL_10892.4 | |
| IL_9Y4G_142 | 1/A6/4582:4585, 1/A6/4717:4721 | Double sheared | homologous IL_9PN5_110 IL_58355.4 | |
| IL_9Y4G_143 | 1/A6/4590:4592, 1/A6/4618:4620 | Isolated non-canonical cWW pair | homologous IL_9AXU_108 IL_71625.5 | |
| IL_9Y4G_144 | 1/A6/4596:4603, 1/A6/4608:4614 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8GLP_159 IL_34443.1 | |
| IL_9Y4G_145 | 1/A6/4624:4629, 1/A6/4669:4673 | No text annotation | homologous IL_8GLP_317 IL_31690.1 | |
| IL_9Y4G_146 | 1/A6/4632:4637, 1/A6/4662:4666 | No text annotation | homologous IL_8GLP_318 IL_43276.1 | |
| IL_9Y4G_147 | 1/A6/4638:4640, 1/A6/4659:4661 | Isolated cWH basepair | homologous IL_8GLP_162 IL_10892.4 | |
| IL_9Y4G_148 | 1/A6/4641:4642, 1/A6/4655:4658 | No text annotation | homologous IL_8GLP_163 IL_44609.4 | |
| IL_9Y4G_149 | 1/A6/4681:4685, 1/A6/4705:4709 | UAA/GAN | homologous IL_9H3G_133 IL_08938.3 | |
| IL_9Y4G_152 | 1/A6/4754:4765, 1/A6/4869:4878 | No text annotation | ||
| IL_9Y4G_157 | 1/A6/4972:4975, 1/A6/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_9PN5_125 IL_71194.4 | |
| IL_9Y4G_159 | 1/A6/4996:4997, 1/A6/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_05642.5 | |
| IL_9Y4G_160 | 1/A6/5000:5003, 1/A6/5044:5050 | No text annotation | ||
| IL_9Y4G_161 | 1/A6/5003:5009, 1/A6/5039:5044 | No text annotation | homologous IL_8GLP_176 NA | |
| IL_9Y4G_162 | 1/A6/5012:5014, 1/A6/5035:5036 | Single bulged C | homologous IL_9H3G_145 IL_05642.5 | |
| IL_9Y4G_163 | 1/A6/5014:5017, 1/A6/5032:5035 | Double sheared; A in syn | geometric IL_8OI5_132 IL_58355.4 | |
| IL_9Y4G_164 | 1/A7/15:16, 1/A7/62:64 | Single bulged C | geometric IL_8QYX_165 IL_05642.5 | |
| IL_9Y4G_167 | 1/A7/32:36, 1/A7/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.14 | |
| IL_9Y4G_168 | 1/A7/72:78, 1/A7/98:103 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_4V9F_106 IL_02666.3 | |
| IL_9Y4G_169 | 1/A7/79:81, 1/A7/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_01334.1 | |
| IL_9Y4G_170 | 1/A7/82:85, 1/A7/92:94 | Isolated non-canonical cWW pair | geometric IL_8QYX_171 IL_01003.6 | |
| IL_9Y4G_171 | 1/A8/64:66, 1/A8/92:95 | No text annotation | homologous IL_8GLP_187 IL_30722.1 | |
| IL_9Y4G_172 | 1/B2/23:25, 1/B2/649:651 | Isolated non-canonical cWW pair | geometric IL_6IA2_001 IL_01003.6 | |
| IL_9Y4G_173 | 1/B2/34:36, 1/B2/519:521 | Isolated non-canonical cWW pair | homologous IL_9PN5_143 IL_01003.6 | |
| IL_9Y4G_174 | 1/B2/37:40, 1/B2/514:518 | Double sheared | geometric IL_8GLP_190 IL_58355.4 | |
| IL_9Y4G_175 | 1/B2/41:47, 1/B2/479:481 | No text annotation | homologous IL_9H3G_158 IL_88082.4 | |
| IL_9Y4G_179 | 1/B2/108:115, 1/B2/348:353 | No text annotation | ||
| IL_9Y4G_188 | 1/B2/359:364, 1/B2/396:403 | Kink-turn with non-sequential stacking | homologous IL_9PN5_159 IL_46174.6 | |
| IL_9Y4G_189 | 1/B2/366:371, 1/B2/393:394 | No text annotation | geometric IL_8GLP_211 IL_01372.3 | |
| IL_9Y4G_190 | 1/B2/411:413, 1/B2/424:429 | No text annotation | homologous IL_9PN5_161 IL_93336.3 | |
| IL_9Y4G_191 | 1/B2/437:439, 1/B2/454:456 | Isolated cWH basepair | homologous IL_9PN5_162 IL_10892.4 | |
| IL_9Y4G_192 | 1/B2/459:461, 1/B2/468:470 | Isolated non-canonical cWW pair | homologous IL_9PN5_163 IL_01003.6 | |
| IL_9Y4G_193 | 1/B2/487:489, 1/B2/511:512 | Single bulged U | homologous IL_9H3G_178 IL_97561.7 | |
| IL_9Y4G_195 | 1/B2/495:496, 1/B2/506:508 | Single bulged G | homologous IL_9H3G_180 IL_28408.4 | |
| IL_9Y4G_199 | 1/B2/599:608, 1/B2/635:637 | No text annotation | ||
| IL_9Y4G_200 | 1/B2/611:617, 1/B2/624:632 | Kink-turn related | homologous IL_9H3G_187 IL_52042.3 | |
| IL_9Y4G_201 | 1/B2/663:665, 1/B2/1162:1164 | Isolated non-canonical cWW pair | homologous IL_9H3G_188 IL_01003.6 | |
| IL_9Y4G_202 | 1/B2/665:671, 1/B2/1161:1162 | No text annotation | homologous IL_9PN5_174 IL_20847.3 | |
| IL_9Y4G_203 | 1/B2/673:675, 1/B2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_9H3G_190 IL_01003.6 | |
| IL_9Y4G_204 | 1/B2/676:680, 1/B2/1025:1029 | No text annotation | homologous IL_9H3G_191 IL_05821.3 | |
| IL_9Y4G_212 | 1/B2/807:815, 1/B2/849:856 | No text annotation | homologous IL_9H3G_194 IL_59049.4 | |
| IL_9Y4G_215 | 1/B2/922:923, 1/B2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_3D0U_004 IL_74641.4 | |
| IL_9Y4G_217 | 1/B2/928:931, 1/B2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_9PN5_184 IL_15225.4 | |
| IL_9Y4G_218 | 1/B2/931:935, 1/B2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.4 | |
| IL_9Y4G_219 | 1/B2/942:945, 1/B2/981:984 | Tandem non-canonical cWW pairs | homologous IL_9PN5_186 IL_15225.4 | |
| IL_9Y4G_220 | 1/B2/952:956, 1/B2/967:974 | Kink-turn | geometric IL_8GLP_240 IL_71972.2 | |
| IL_9Y4G_221 | 1/B2/1042:1047, 1/B2/1071:1073 | No text annotation | homologous IL_9H3G_203 IL_31690.1 | |
| IL_9Y4G_222 | 1/B2/1047:1051, 1/B2/1067:1071 | No text annotation | homologous IL_9H3G_204 IL_05821.3 | |
| IL_9Y4G_223 | 1/B2/1091:1093, 1/B2/1152:1158 | No text annotation | homologous IL_9H3G_205 IL_82706.4 | |
| IL_9Y4G_224 | 1/B2/1098:1101, 1/B2/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_9PN5_192 IL_15225.4 | |
| IL_9Y4G_225 | 1/B2/1101:1103, 1/B2/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4M6D_011 IL_01003.6 | |
| IL_9Y4G_227 | 1/B2/1168:1175, 1/B2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_9PN5_194 IL_84044.3 | |
| IL_9Y4G_228 | 1/B2/1208:1210, 1/B2/1689:1692 | No text annotation | ||
| IL_9Y4G_229 | 1/B2/1214:1217, 1/B2/1681:1685 | No text annotation | homologous IL_9H3G_212 IL_63596.14 | |
| IL_9Y4G_230 | 1/B2/1230:1232, 1/B2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_9H3G_213 IL_01003.6 | |
| IL_9Y4G_231 | 1/B2/1235:1236, 1/B2/1521:1523 | Minor groove platform | homologous IL_9H3G_214 IL_98469.1 | |
| IL_9Y4G_239 | 1/B2/1329:1335, 1/B2/1492:1500 | No text annotation | ||
| IL_9Y4G_240 | 1/B2/1333:1335, 1/B2/1492:1498 | No text annotation | homologous IL_9H3G_221 IL_09439.2 | |
| IL_9Y4G_241 | 1/B2/1337:1338, 1/B2/1488:1490 | Single bulged A | homologous IL_9H3G_222 IL_14190.4 | |
| IL_9Y4G_242 | 1/B2/1347:1349, 1/B2/1380:1382 | Isolated cWH basepair | homologous IL_9H3G_223 IL_10892.4 | |
| IL_9Y4G_252 | 1/B2/1541:1550, 1/B2/1582:1592 | No text annotation | ||
| IL_9Y4G_256 | 1/B2/1700:1702, 1/B2/1833:1836 | No text annotation | homologous IL_9PN5_220 IL_18228.3 | |
| IL_9Y4G_257 | 1/B2/1702:1705, 1/B2/1829:1833 | No text annotation | homologous IL_9PN5_221 IL_25873.4 | |
| IL_9Y4G_258 | 1/B2/1706:1708, 1/B2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_9H3G_235 IL_01003.6 | |
| IL_9Y4G_259 | 1/B2/1708:1711, 1/B2/1822:1826 | No text annotation | homologous IL_9PN5_223 IL_37443.2 | |
| IL_9Y4G_260 | 1/B2/1714:1716, 1/B2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_9H3G_237 IL_01003.6 | |
| IL_9Y4G_261 | 1/B2/1717:1720, 1/B2/1813:1816 | Double sheared | homologous IL_9PN5_225 IL_58355.4 | |
| IL_9Y4G_262 | 1/B2/1720:1722, 1/B2/1812:1813 | Single bulged U | homologous IL_9PN5_226 IL_97561.7 | |
| IL_9Y4G_263 | 1/B2/1729:1731, 1/B2/1803:1805 | No text annotation | homologous IL_9PN5_227 IL_55553.3 | |
| IL_9Y4G_264 | 1/B2/1733:1736, 1/B2/1798:1801 | Double sheared | homologous IL_9H3G_241 IL_58355.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9Y4G_007 | No text annotation | ||
| IL_9Y4G_010 | No text annotation | ||
| IL_9Y4G_011 | No text annotation | ||
| IL_9Y4G_012 | Major groove platform | ||
| IL_9Y4G_013 | No text annotation | ||
| IL_9Y4G_021 | Single bulged C | ||
| IL_9Y4G_022 | Isolated non-canonical cWW pair | ||
| IL_9Y4G_023 | No text annotation | ||
| IL_9Y4G_024 | No text annotation | ||
| IL_9Y4G_025 | No text annotation | ||
| IL_9Y4G_026 | No text annotation | ||
| IL_9Y4G_027 | No text annotation | ||
| IL_9Y4G_028 | No text annotation | ||
| IL_9Y4G_030 | Major groove intercalation | ||
| IL_9Y4G_031 | Single stack bend | ||
| IL_9Y4G_035 | Isolated non-canonical cWW pair | ||
| IL_9Y4G_036 | No text annotation | ||
| IL_9Y4G_037 | No text annotation | ||
| IL_9Y4G_038 | No text annotation | ||
| IL_9Y4G_039 | No text annotation | ||
| IL_9Y4G_040 | Single bulged C | ||
| IL_9Y4G_041 | Single stack bend | ||
| IL_9Y4G_042 | Single stack bend | ||
| IL_9Y4G_043 | Single stack bend | ||
| IL_9Y4G_044 | Isolated non-canonical cWW pair | ||
| IL_9Y4G_045 | No text annotation | ||
| IL_9Y4G_046 | No text annotation | ||
| IL_9Y4G_066 | No text annotation | ||
| IL_9Y4G_067 | No text annotation | ||
| IL_9Y4G_068 | Single bulged G | ||
| IL_9Y4G_070 | No text annotation | ||
| IL_9Y4G_078 | Kink-turn | ||
| IL_9Y4G_079 | No text annotation | ||
| IL_9Y4G_080 | No text annotation | ||
| IL_9Y4G_089 | Minor groove platform | ||
| IL_9Y4G_094 | No text annotation | ||
| IL_9Y4G_097 | Single bulged G | ||
| IL_9Y4G_104 | Isolated non-canonical cWW pair | ||
| IL_9Y4G_105 | No text annotation | ||
| IL_9Y4G_106 | No text annotation | ||
| IL_9Y4G_120 | No text annotation | ||
| IL_9Y4G_121 | No text annotation | ||
| IL_9Y4G_122 | No text annotation | ||
| IL_9Y4G_123 | No text annotation | ||
| IL_9Y4G_125 | No text annotation | ||
| IL_9Y4G_150 | No text annotation | ||
| IL_9Y4G_151 | Tandem non-canonical cWW pairs | ||
| IL_9Y4G_153 | Isolated non-canonical cWW pair | ||
| IL_9Y4G_154 | Tandem non-canonical cWW pairs | ||
| IL_9Y4G_155 | No text annotation | ||
| IL_9Y4G_156 | Single bulged C | ||
| IL_9Y4G_158 | Isolated non-canonical cWW pair | ||
| IL_9Y4G_165 | No text annotation | ||
| IL_9Y4G_166 | Major groove minor groove platform; mini C-loop | ||
| IL_9Y4G_176 | Minor groove platform | ||
| IL_9Y4G_177 | No text annotation | ||
| IL_9Y4G_178 | No text annotation | ||
| IL_9Y4G_180 | No text annotation | ||
| IL_9Y4G_181 | No text annotation | ||
| IL_9Y4G_182 | Isolated cWH basepair | ||
| IL_9Y4G_183 | No text annotation | ||
| IL_9Y4G_184 | No text annotation | ||
| IL_9Y4G_185 | Single stack bend | ||
| IL_9Y4G_186 | Single bulged A | ||
| IL_9Y4G_187 | No text annotation | ||
| IL_9Y4G_194 | No text annotation | ||
| IL_9Y4G_196 | No text annotation | ||
| IL_9Y4G_197 | No text annotation | ||
| IL_9Y4G_198 | Double sheared | ||
| IL_9Y4G_205 | Isolated non-canonical cWW pair | ||
| IL_9Y4G_206 | Isolated non-canonical cWW pair | ||
| IL_9Y4G_207 | Isolated non-canonical cWW pair | ||
| IL_9Y4G_208 | Minor groove platform | ||
| IL_9Y4G_209 | Minor groove platform | ||
| IL_9Y4G_210 | No text annotation | ||
| IL_9Y4G_211 | Isolated non-canonical cWW pair | ||
| IL_9Y4G_213 | Single stack bend | ||
| IL_9Y4G_214 | No text annotation | ||
| IL_9Y4G_216 | Single bulged U | ||
| IL_9Y4G_226 | Single bulged C | ||
| IL_9Y4G_232 | Isolated non-canonical cWW pair | ||
| IL_9Y4G_233 | No text annotation | ||
| IL_9Y4G_234 | No text annotation | ||
| IL_9Y4G_235 | No text annotation | ||
| IL_9Y4G_236 | No text annotation | ||
| IL_9Y4G_237 | Single bulged U | ||
| IL_9Y4G_238 | No text annotation | ||
| IL_9Y4G_243 | Minor groove platform | ||
| IL_9Y4G_244 | No text annotation | ||
| IL_9Y4G_245 | No text annotation | ||
| IL_9Y4G_246 | Isolated non-canonical cWW pair | ||
| IL_9Y4G_247 | No text annotation | ||
| IL_9Y4G_248 | No text annotation | ||
| IL_9Y4G_249 | Multiple bulged bases | ||
| IL_9Y4G_250 | No text annotation | ||
| IL_9Y4G_251 | Isolated non-canonical cWW pair | ||
| IL_9Y4G_253 | No text annotation | ||
| IL_9Y4G_254 | No text annotation | ||
| IL_9Y4G_255 | No text annotation | ||
| IL_9Y4G_265 | No text annotation | ||
| IL_9Y4G_266 | Triple sheared | ||
| IL_9Y4G_267 | No text annotation | ||
| IL_9Y4G_268 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9Y4G_001 | 1/A5/351:367, 1/A5/374:379, 1/A8/21:24 | No text annotation | homologous J3_8GLP_024 J3_07616.3 | |
| J3_9Y4G_002 | 1/A5/380:387, 1/A5/414:415, 1/A8/19:20 | No text annotation | geometric J3_8GLP_025 J3_68715.3 | |
| J3_9Y4G_003 | 1/A5/380:390, 1/A5/401:415, 1/A8/19:20 | No text annotation | homologous J3_9PN5_006 J3_17917.3 | |
| J3_9Y4G_005 | 1/A5/711:713, 1/A5/955:973, 1/A5/1280:1285 | No text annotation | ||
| J3_9Y4G_008 | 1/A5/1531:1537, 1/A5/1622:1624, 1/A5/1640:1643 | No text annotation | homologous J3_9AXU_009 J3_46658.3 | |
| J3_9Y4G_009 | 1/A5/1545:1548, 1/A5/1580:1584, 1/A5/1609:1614 | No text annotation | ||
| J3_9Y4G_010 | 1/A5/1726:1727, 1/A5/1802:1806, 1/A5/1832:1836 | No text annotation | homologous J3_8GLP_029 NA | |
| J3_9Y4G_012 | 1/A6/2393:2399, 1/A6/2805:2807, 1/A6/2819:2822 | No text annotation | homologous J3_9PN5_012 J3_05025.3 | |
| J3_9Y4G_013 | 1/A6/2402:2405, 1/A6/2785:2791, 1/A6/2800:2802 | No text annotation | homologous J3_8GLP_005 J3_76012.3 | |
| J3_9Y4G_014 | 1/A6/2440:2445, 1/A6/2515:2519, 1/A6/2536:2537 | No text annotation | homologous J3_9AXU_015 J3_94309.3 | |
| J3_9Y4G_015 | 1/A6/2451:2456, 1/A6/2465:2476, 1/A6/2501:2508 | No text annotation | homologous J3_8GLP_031 J3_53783.2 | |
| J3_9Y4G_016 | 1/A6/2549:2554, 1/A6/2573:2575, 1/A6/2757:2770 | No text annotation | ||
| J3_9Y4G_017 | 1/A6/2575:2576, 1/A6/2585:2589, 1/A6/2756:2757 | No text annotation | homologous J3_9PN5_016 J3_05348.3 | |
| J3_9Y4G_018 | 1/A6/2598:2602, 1/A6/2737:2738, 1/A6/2742:2747 | No text annotation | homologous J3_8GLP_033 J3_08594.3 | |
| J3_9Y4G_019 | 1/A6/3937:3939, 1/A6/4074:4078, 1/A6/4168:4173 | No text annotation | homologous J3_8GLP_007 J3_17460.1 | |
| J3_9Y4G_020 | 1/A6/4091:4094, 1/A6/4114:4129, 1/A6/4155:4158 | No text annotation | homologous J3_8GLP_008 NA | |
| J3_9Y4G_021 | 1/A6/4228:4230, 1/A6/4331:4342, 1/A6/4370:4375 | No text annotation | homologous J3_8GLP_034 J3_04772.3 | |
| J3_9Y4G_022 | 1/A6/4241:4243, 1/A6/4267:4269, 1/A6/4278:4283 | No text annotation | homologous J3_9H3G_023 J3_05327.3 | |
| J3_9Y4G_023 | 1/A6/4463:4466, 1/A6/4491:4493, 1/A6/4507:4513 | No text annotation | homologous J3_9H3G_024 J3_44047.3 | |
| J3_9Y4G_024 | 1/A6/4748:4754, 1/A6/4878:4885, 1/A6/4934:4952 | No text annotation | ||
| J3_9Y4G_025 | 1/A6/4970:4972, 1/A6/4986:4991, 1/A6/5060:5063 | No text annotation | ||
| J3_9Y4G_026 | 1/A7/9:14, 1/A7/65:66, 1/A7/109:110 | No text annotation | geometric J3_1UN6_002 J3_26985.3 | |
| J3_9Y4G_027 | 1/A8/44:45, 1/A8/58:64, 1/A8/95:99 | No text annotation | homologous J3_8GLP_039 J3_01004.3 | |
| J3_9Y4G_028 | 1/B2/40:41, 1/B2/481:487, 1/B2/512:514 | No text annotation | homologous J3_9H3G_028 J3_58657.3 | |
| J3_9Y4G_030 | 1/B2/682:684, 1/B2/918:922, 1/B2/1022:1023 | No text annotation | geometric J3_9H3G_030 J3_01633.3 | |
| J3_9Y4G_031 | 1/B2/682:684, 1/B2/918:923, 1/B2/1019:1023 | No text annotation | homologous J3_9PN5_031 J3_17385.7 | |
| J3_9Y4G_033 | 1/B2/938:941, 1/B2/985:993, 1/B2/1000:1004 | No text annotation | homologous J3_9H3G_033 NA | |
| J3_9Y4G_034 | 1/B2/1094:1096, 1/B2/1136:1140, 1/B2/1147:1151 | No text annotation | homologous J3_9H3G_034 NA | |
| J3_9Y4G_035 | 1/B2/1218:1221, 1/B2/1645:1651, 1/B2/1673:1680 | No text annotation | homologous J3_9PN5_035 J3_85722.3 | |
| J3_9Y4G_036 | 1/B2/1225:1228, 1/B2/1530:1532, 1/B2/1638:1641 | No text annotation | homologous J3_9H3G_036 J3_44359.3 | |
| J3_9Y4G_037 | 1/B2/1237:1244, 1/B2/1255:1266, 1/B2/1516:1520 | No text annotation | homologous J3_9H3G_037 J3_88451.3 | |
| J3_9Y4G_038 | 1/B2/1272:1277, 1/B2/1320:1324, 1/B2/1504:1510 | No text annotation | homologous J3_9H3G_038 J3_87797.4 | |
| J3_9Y4G_040 | 1/B2/1350:1351, 1/B2/1360:1363, 1/B2/1375:1379 | No text annotation | homologous J3_9PN5_040 J3_76043.6 | |
| J3_9Y4G_043 | 1/B2/1532:1536, 1/B2/1597:1604, 1/B2/1635:1638 | No text annotation | homologous J3_9PN5_043 J3_03192.3 | |
| J4_9Y4G_001 | 1/A5/196:199, 1/A5/215:222, 1/A5/226:228, 1/A5/240:244 | No text annotation | homologous J4_8GLP_002 NA | |
| J4_9Y4G_002 | 1/A6/2365:2371, 1/A6/2389:2391, 1/A6/2824:2829, 1/A6/3856:3857 | No text annotation | homologous J4_8GLP_004 NA | |
| J4_9Y4G_003 | 1/A6/2406:2410, 1/A6/2434:2439, 1/A6/2538:2539, 1/A6/2777:2784 | No text annotation | homologous J4_8GLP_005 J4_77353.2 | |
| J4_9Y4G_004 | 1/A6/2618:2619, 1/A6/2637:2642, 1/A6/2692:2698, 1/A6/2718:2719 | No text annotation | homologous J4_8GLP_008 NA | |
| J4_9Y4G_005 | 1/A6/3634:3638, 1/A6/3650:3654, 1/A6/3690:3694, 1/A6/3821:3826 | No text annotation | homologous J4_9PN5_006 J4_78485.3 | |
| J4_9Y4G_006 | 1/A6/3696:3698, 1/A6/3752:3753, 1/A6/3771:3781, 1/A6/3811:3819 | No text annotation | ||
| J4_9Y4G_007 | 1/A6/4231:4235, 1/A6/4289:4293, 1/A6/4317:4319, 1/A6/4328:4330 | No text annotation | homologous J4_9PN5_008 J4_59590.3 | |
| J4_9Y4G_008 | 1/A6/4587:4590, 1/A6/4620:4621, 1/A6/4676:4678, 1/A6/4712:4715 | No text annotation | homologous J4_8GLP_013 J4_69783.1 | |
| J4_9Y4G_009 | 1/B2/98:106, 1/B2/355:357, 1/B2/405:409, 1/B2/431:432 | No text annotation | homologous J4_9H3G_013 J4_15241.4 | |
| J4_9Y4G_010 | 1/B2/671:673, 1/B2/1032:1037, 1/B2/1078:1089, 1/B2/1160:1161 | No text annotation | homologous J4_9H3G_014 J4_14595.3 | |
| J5_9Y4G_001 | 1/A5/19:21, 1/A8/35:42, 1/A8/101:106, 1/A8/113:114, 1/A8/136:138 | No text annotation | homologous J5_8GLP_001 J5_27223.3 | |
| J5_9Y4G_002 | 1/A5/111:116, 1/A5/155:161, 1/A5/274:283, 1/A5/304:310, 1/A5/327:330 | No text annotation | ||
| J5_9Y4G_003 | 1/A5/1335:1340, 1/A5/1516:1519, 1/A5/1658:1661, 1/A6/2288:2290, 1/A6/2345:2351 | No text annotation | homologous J5_9AXU_002 J5_08384.3 | |
| J5_9Y4G_004 | 1/A6/2855:2863, 1/A6/2887:2888, 1/A6/3613:3614, 1/A6/3618:3626, 1/A6/3835:3837 | No text annotation | homologous J5_8GLP_003 J5_99177.3 | |
| J5_9Y4G_005 | 1/A6/3903:3910, 1/A6/4392:4400, 1/A6/4444:4453, 1/A6/4528:4534, 1/A6/4552:4557 | No text annotation | ||
| J5_9Y4G_006 | 1/A6/3920:3923, 1/A6/4188:4191, 1/A6/4204:4205, 1/A6/4227:4228, 1/A6/4375:4381 | No text annotation | homologous J5_9H3G_006 J5_96125.3 | |
| J5_9Y4G_007 | 1/B2/30:34, 1/B2/521:527, 1/B2/558:565, 1/B2/585:595, 1/B2/641:644 | No text annotation | ||
| J5_9Y4G_008 | 1/B2/53:56, 1/B2/89:96, 1/B2/434:436, 1/B2/457:459, 1/B2/470:474 | No text annotation | homologous J5_9PN5_009 J5_58574.3 | |
| J5_9Y4G_011 | 1/B2/685:691, 1/B2/739:744, 1/B2/797:800, 1/B2/865:873, 1/B2/912:917 | No text annotation | ||
| J6_9Y4G_001 | 1/A5/21:26, 1/A5/57:67, 1/A5/74:78, 1/A5/105:109, 1/A5/332:342, 1/A8/32:35 | No text annotation | ||
| J6_9Y4G_002 | 1/A5/1352:1355, 1/A5/1384:1388, 1/A5/1395:1399, 1/A5/1418:1421, 1/A5/1464:1466, 1/A5/1499:1504 | No text annotation | homologous J6_8GLP_002 NA | |
| J6_9Y4G_003 | 1/A6/3920:3923, 1/A6/4188:4191, 1/A6/4204:4205, 1/A6/4227:4230, 1/A6/4331:4342, 1/A6/4370:4381 | No text annotation | ||
| J7_9Y4G_001 | 1/A5/1666:1671, 1/A5/1684:1685, 1/A5/1852:1855, 1/A5/1879:1884, 1/A5/1895:1899, 1/A5/2077:2078, 1/A6/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9Y4G_004 | No text annotation | ||
| J3_9Y4G_006 | No text annotation | ||
| J3_9Y4G_007 | No text annotation | ||
| J3_9Y4G_011 | No text annotation | ||
| J3_9Y4G_029 | No text annotation | ||
| J3_9Y4G_032 | No text annotation | ||
| J3_9Y4G_039 | No text annotation | ||
| J3_9Y4G_041 | No text annotation | ||
| J3_9Y4G_042 | No text annotation | ||
| J4_9Y4G_011 | tRNA junction | ||
| J5_9Y4G_009 | No text annotation | ||
| J5_9Y4G_010 | No text annotation |
Coloring options: