HL_9Y4G_003

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_003 not in the Motif Atlas

Homologous match to HL_8GLP_003

Geometric discrepancy: 0.1506

The information below is about HL_8GLP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.4

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

9Y4G|1|A5|C|89
9Y4G|1|A5|G|90
9Y4G|1|A5|G|91
9Y4G|1|A5|C|92
9Y4G|1|A5|G|93
9Y4G|1|A5|A|94
9Y4G|1|A5|G|95

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CL

60S ribosomal protein L13

Chain CQ

60S ribosomal protein L18

Chain Ca

60S ribosomal protein L27a

Chain Cc

Transfer RNA; tRNA

Chain Co

60S ribosomal protein L36a