HL_9Y4G_008

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

9Y4G|1|A5|G|294, 9Y4G|1|A5|A|295, 9Y4G|1|A5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_008 not in the Motif Atlas

Homologous match to HL_8GLP_008

Geometric discrepancy: 0.1812

The information below is about HL_8GLP_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

9Y4G|1|A5|C|289
9Y4G|1|A5|U|290
9Y4G|1|A5|U|291
9Y4G|1|A5|G|292
9Y4G|1|A5|G|293
9Y4G|1|A5|G|294
9Y4G|1|A5|A|295
9Y4G|1|A5|A|296
9Y4G|1|A5|U|297
9Y4G|1|A5|G|298

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CL

60S ribosomal protein L13

Chain CN

60S ribosomal protein L15

Chain Ca

60S ribosomal protein L27a

Chain Co

60S ribosomal protein L36a