HL_9Y4G_009

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

9Y4G|1|A5|G|315, 9Y4G|1|A5|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_009 not in the Motif Atlas

Homologous match to HL_8GLP_009

Geometric discrepancy: 0.1071

The information below is about HL_8GLP_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00911.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9Y4G|1|A5|G|314
9Y4G|1|A5|G|315
9Y4G|1|A5|U|316
9Y4G|1|A5|A|317
9Y4G|1|A5|A|318
9Y4G|1|A5|A|319
9Y4G|1|A5|C|320
9Y4G|1|A5|U|321
9Y4G|1|A5|C|322
9Y4G|1|A5|C|323

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CN

60S ribosomal protein L15

Chain Ca

60S ribosomal protein L27a

Chain Ci

60S ribosomal protein L36

Chain Co

60S ribosomal protein L36a