HL_9Y4G_012

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGCCGCGGGACCGAAACCCCC

Length

22 nucleotides

Bulged bases

9Y4G|1|A5|G|760, 9Y4G|1|A5|G|761, 9Y4G|1|A5|C|762, 9Y4G|1|A5|C|763, 9Y4G|1|A5|G|888, 9Y4G|1|A5|C|889, 9Y4G|1|A5|G|890, 9Y4G|1|A5|G|891, 9Y4G|1|A5|G|892, 9Y4G|1|A5|A|893, 9Y4G|1|A5|C|894, 9Y4G|1|A5|C|895, 9Y4G|1|A5|G|896, 9Y4G|1|A5|A|897, 9Y4G|1|A5|A|898, 9Y4G|1|A5|A|899, 9Y4G|1|A5|C|900, 9Y4G|1|A5|C|901

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A5|G|759
9Y4G|1|A5|G|760
9Y4G|1|A5|G|761
9Y4G|1|A5|C|762
9Y4G|1|A5|C|763
9Y4G|1|A5|G|888
9Y4G|1|A5|C|889
9Y4G|1|A5|G|890
9Y4G|1|A5|G|891
9Y4G|1|A5|G|892
9Y4G|1|A5|A|893
9Y4G|1|A5|C|894
9Y4G|1|A5|C|895
9Y4G|1|A5|G|896
9Y4G|1|A5|A|897
9Y4G|1|A5|A|898
9Y4G|1|A5|A|899
9Y4G|1|A5|C|900
9Y4G|1|A5|C|901
9Y4G|1|A5|C|902
9Y4G|1|A5|C|903
9Y4G|1|A5|C|904

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain CH

60S ribosomal protein L9