HL_9Y4G_014

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUCCGGGUCG

Length

11 nucleotides

Bulged bases

9Y4G|1|A5|C|1110, 9Y4G|1|A5|U|1111, 9Y4G|1|A5|C|1112, 9Y4G|1|A5|C|1155, 9Y4G|1|A5|G|1156, 9Y4G|1|A5|G|1157, 9Y4G|1|A5|G|1158, 9Y4G|1|A5|U|1159, 9Y4G|1|A5|C|1160

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A5|C|1109
9Y4G|1|A5|C|1110
9Y4G|1|A5|U|1111
9Y4G|1|A5|C|1112
9Y4G|1|A5|C|1155
9Y4G|1|A5|G|1156
9Y4G|1|A5|G|1157
9Y4G|1|A5|G|1158
9Y4G|1|A5|U|1159
9Y4G|1|A5|C|1160
9Y4G|1|A5|G|1161

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains