HL_9Y4G_027

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

9Y4G|1|A5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_027 not in the Motif Atlas

Homologous match to HL_9AXU_023

Geometric discrepancy: 0.113

The information below is about HL_9AXU_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9Y4G|1|A5|G|1864
9Y4G|1|A5|G|1865
9Y4G|1|A5|U|1866
9Y4G|1|A5|A|1867
9Y4G|1|A5|A|1868
9Y4G|1|A5|G|1869
9Y4G|1|A5|C|1870

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CI

60S ribosomal protein L10-like