HL_9Y4G_032
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Y4G_032 not in the Motif Atlas
- Homologous match to HL_8GLP_033
- Geometric discrepancy: 0.121
- The information below is about HL_8GLP_033
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9Y4G|1|A6|A|2376
9Y4G|1|A6|C|2377
9Y4G|1|A6|G|2378
9Y4G|1|A6|A|2379
9Y4G|1|A6|G|2380
9Y4G|1|A6|A|2381
9Y4G|1|A6|A|2382
9Y4G|1|A6|C|2383
9Y4G|1|A6|U|2384
Current chains
- Chain A6
- LSU-beta rRNA (2108-MER)
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CP
- 60S ribosomal protein L17
- Chain CR
- 60S ribosomal protein L19
- Chain Cd
- 60S ribosomal protein L31
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