HL_9Y4G_033

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

9Y4G|1|A6|G|2421, 9Y4G|1|A6|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_033 not in the Motif Atlas

Homologous match to HL_8GLP_034

Geometric discrepancy: 0.1324

The information below is about HL_8GLP_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49081.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9Y4G|1|A6|A|2420
9Y4G|1|A6|G|2421
9Y4G|1|A6|C|2422
9Y4G|1|A6|A|2423
9Y4G|1|A6|G|2424
9Y4G|1|A6|U|2425
9Y4G|1|A6|U|2426

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CP

60S ribosomal protein L17

Chain CR

60S ribosomal protein L19

Chain Cl

60S ribosomal protein L39