HL_9Y4G_045

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9Y4G|1|A6|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_045 not in the Motif Atlas

Homologous match to HL_8GLP_047

Geometric discrepancy: 0.1455

The information below is about HL_8GLP_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

9Y4G|1|A6|C|2872
9Y4G|1|A6|U|2873
9Y4G|1|A6|U|2874
9Y4G|1|A6|C|2875
9Y4G|1|A6|G|2876
9Y4G|1|A6|G|2877

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain Cn

60S ribosomal protein L41

Chain Cp

60S ribosomal protein L37a