HL_9Y4G_046

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGCUGGGGGCCCCAGCUGCGGCGCCUCGCCUC

Length

33 nucleotides

Bulged bases

9Y4G|1|A6|G|2911, 9Y4G|1|A6|G|2912, 9Y4G|1|A6|C|2913, 9Y4G|1|A6|U|2914, 9Y4G|1|A6|G|2915, 9Y4G|1|A6|G|2916, 9Y4G|1|A6|G|2917, 9Y4G|1|A6|G|2918, 9Y4G|1|A6|G|3274, 9Y4G|1|A6|C|3275, 9Y4G|1|A6|C|3276, 9Y4G|1|A6|C|3277, 9Y4G|1|A6|C|3278, 9Y4G|1|A6|A|3279, 9Y4G|1|A6|G|3280, 9Y4G|1|A6|C|3281, 9Y4G|1|A6|U|3282, 9Y4G|1|A6|G|3283, 9Y4G|1|A6|C|3284, 9Y4G|1|A6|G|3285, 9Y4G|1|A6|G|3286, 9Y4G|1|A6|C|3287, 9Y4G|1|A6|G|3288, 9Y4G|1|A6|C|3576, 9Y4G|1|A6|C|3577, 9Y4G|1|A6|U|3578, 9Y4G|1|A6|C|3579, 9Y4G|1|A6|G|3580, 9Y4G|1|A6|C|3581, 9Y4G|1|A6|C|3582, 9Y4G|1|A6|U|3583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A6|G|2910
9Y4G|1|A6|G|2911
9Y4G|1|A6|G|2912
9Y4G|1|A6|C|2913
9Y4G|1|A6|U|2914
9Y4G|1|A6|G|2915
9Y4G|1|A6|G|2916
9Y4G|1|A6|G|2917
9Y4G|1|A6|G|2918
9Y4G|1|A6|G|3274
9Y4G|1|A6|C|3275
9Y4G|1|A6|C|3276
9Y4G|1|A6|C|3277
9Y4G|1|A6|C|3278
9Y4G|1|A6|A|3279
9Y4G|1|A6|G|3280
9Y4G|1|A6|C|3281
9Y4G|1|A6|U|3282
9Y4G|1|A6|G|3283
9Y4G|1|A6|C|3284
9Y4G|1|A6|G|3285
9Y4G|1|A6|G|3286
9Y4G|1|A6|C|3287
9Y4G|1|A6|G|3288
9Y4G|1|A6|C|3576
9Y4G|1|A6|C|3577
9Y4G|1|A6|U|3578
9Y4G|1|A6|C|3579
9Y4G|1|A6|G|3580
9Y4G|1|A6|C|3581
9Y4G|1|A6|C|3582
9Y4G|1|A6|U|3583
9Y4G|1|A6|C|3584

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CU

60S ribosomal protein L22

Chain Ck

60S ribosomal protein L38