HL_9Y4G_054

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGAGG

Length

6 nucleotides

Bulged bases

9Y4G|1|A6|G|4104

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_054 not in the Motif Atlas

Geometric match to HL_6CK5_001

Geometric discrepancy: 0.1378

The information below is about HL_6CK5_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

9Y4G|1|A6|C|4102
9Y4G|1|A6|C|4103
9Y4G|1|A6|G|4104
9Y4G|1|A6|A|4105
9Y4G|1|A6|G|4106
9Y4G|1|A6|G|4107

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains