HL_9Y4G_057

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

9Y4G|1|A6|A|4214, 9Y4G|1|A6|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_057 not in the Motif Atlas

Homologous match to HL_8GLP_060

Geometric discrepancy: 0.0845

The information below is about HL_8GLP_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.3

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9Y4G|1|A6|U|4210
9Y4G|1|A6|C|4211
9Y4G|1|A6|A|4212
9Y4G|1|A6|A|4213
9Y4G|1|A6|A|4214
9Y4G|1|A6|C|4215
9Y4G|1|A6|G|4216
9Y4G|1|A6|G|4217
9Y4G|1|A6|U|4218
9Y4G|1|A6|A|4219
9Y4G|1|A6|A|4220
9Y4G|1|A6|C|4221
9Y4G|1|A6|G|4222

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CI

60S ribosomal protein L10-like

Chain CT

60S ribosomal protein L21

Chain Cb

60S ribosomal protein L29