HL_9Y4G_068

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_068 not in the Motif Atlas

Homologous match to HL_8GLP_071

Geometric discrepancy: 0.1014

The information below is about HL_8GLP_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9Y4G|1|A6|U|4646
9Y4G|1|A6|G|4647
9Y4G|1|A6|A|4648
9Y4G|1|A6|G|4649
9Y4G|1|A6|G|4650
9Y4G|1|A6|A|4651

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CR

60S ribosomal protein L19

Chain CU

60S ribosomal protein L22

Chain Cd

60S ribosomal protein L31